Pseudomonas aeruginosa PA7, PSPA7_4658
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 246 | 312 | 5.0E-7 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 234 | 362 | 4.3E-20 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 550 | 799 | 1.1E-83 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 252 | 361 | 1.8E-11 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 252 | 370 | 3.5E-14 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 554 | 797 | 3.34519E-87 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 555 | 792 | 5.2E-62 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 375 | 532 | 3.4E-45 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 371 | 535 | 4.9E-44 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 548 | 797 | 4.4E-73 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 380 | 538 | 1.02E-49 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 365 | 538 | 1.6E-57 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 370 | 538 | 1.1E-47 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 376 | 534 | 1.07124E-61 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 255 | 361 | 6.92907E-10 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 554 | 796 | 5.75E-74 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 364 | 536 | 8.0E-64 |
| Coils | Coil | Coil | - | - | 813 | 818 | - |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 233 | 362 | 2.97E-18 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 223 | 794 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.