Pseudomonas aeruginosa PA7, PSPA7_6186

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042426 choline catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5399
 ECO:0000249
sequence similarity evidence used in automatic assertion		 17951379
Biological Process GO:0031457 glycine betaine catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5399
 ECO:0000249
sequence similarity evidence used in automatic assertion		 17951379
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PA7 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.1060.10:FF:000014 DgcB, Dimethylglycine catabolism - - 223 362 4.4E-82
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 407 486 0.0075
Pfam PF13183 4Fe-4S dicluster domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain 247 341 1.1E-11
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 530 616 1.1E-13
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 225 362 6.7E-28
Pfam PF11982 Domain of unknown function (DUF3483) IPR021872 Protein of unknown function DUF3483 4 225 3.7E-85
SUPERFAMILY SSF46548 alpha-helical ferredoxin - - 227 357 2.96E-19
PANTHER PTHR43255 IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED - - 19 637 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.