Pseudomonas aeruginosa M18, PAM18_2288
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 594 | 634 | 7.1E-7 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1105 | 1168 | 2.5E-23 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 629 | 1167 | 7.4E-77 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1112 | 1132 | 4.1E-16 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 927 | 965 | 7.5E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 367 | 399 | 2.6E-4 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 181 | 628 | 9.5E-39 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 636 | 669 | 1.5E-6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 395 | 419 | - |
| Coils | Coil | Coil | - | - | 416 | 436 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 531 | 570 | 1.9E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 381 | 415 | 3.4E-4 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1135 | 1154 | 4.1E-16 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 636 | 670 | 4.9E-6 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1059 | 1079 | 4.1E-16 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 595 | 630 | 3.2E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 489 | 524 | 4.9E-8 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 496 | 701 | 1.14E-5 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 46 | 120 | 8.7E-14 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 531 | 566 | 1.3E-6 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1065 | 1102 | 4.3E-15 |
| PANTHER | PTHR32305 | - | - | - | 24 | 1301 | 1.3E-68 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 489 | 528 | 2.0E-6 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.