Pseudomonas aeruginosa M18, PAM18_4166 (phhR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006559 L-phenylalanine catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0873
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8939433
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other M18 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA - - 210 374 6.47217E-20
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 80 138 3.66E-9
FunFam G3DSA:3.30.450.20:FF:000052 Sigma-54 dependent transcriptional regulator - - 80 187 1.4E-64
CDD cd00130 PAS IPR000014 PAS domain 88 145 2.29169E-6
NCBIfam TIGR04381 JCVI: TyrR family helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 465 511 5.9E-21
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 223 368 1.2E-6
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 455 510 1.43E-7
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 150 510 2.6E-104
FunFam G3DSA:1.10.10.60:FF:000112 TyrR family transcriptional regulator - - 455 512 1.6E-28
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 204 370 1.8E-58
Gene3D G3DSA:1.10.8.60 - - - 376 449 1.6E-20
Gene3D G3DSA:3.30.70.260 - - - 1 78 9.1E-21
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 203 445 4.9E-61
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 2 68 5.41E-8
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 189 375 3.2E-58
Gene3D G3DSA:1.10.10.60 - - - 458 511 1.4E-18
Pfam PF00989 PAS fold IPR013767 PAS fold 79 136 1.6E-6
Pfam PF18024 Helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 463 510 8.3E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 80 187 1.5E-20
MobiDBLite mobidb-lite consensus disorder prediction - - 495 515 -
Pfam PF01842 ACT domain IPR002912 ACT domain 2 60 4.6E-7
SMART SM00091 pas_2 IPR000014 PAS domain 78 144 9.6E-9
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 194 374 1.9E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.