Pseudomonas aeruginosa M18, PAM18_4193

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF158472 HAMP domain-like - - 311 359 6.8E-5
Pfam PF00672 HAMP domain IPR003660 HAMP domain 311 358 8.2E-8
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 5 650 7.5E-111
CDD cd06225 HAMP - - 313 357 2.91601E-5
SMART SM00304 HAMP_11 IPR003660 HAMP domain 310 362 3.2E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 359 483 1.1E-22
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 492 647 1.18E-46
CDD cd01949 GGDEF IPR000160 GGDEF domain 488 645 1.10515E-62
CDD cd00130 PAS IPR000014 PAS domain 371 473 3.55292E-17
SMART SM00091 pas_2 IPR000014 PAS domain 362 428 6.3E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 362 484 6.4E-26
SMART SM00267 duf1_3 IPR000160 GGDEF domain 476 647 1.9E-63
Pfam PF00989 PAS fold IPR013767 PAS fold 363 473 9.7E-16
Coils Coil Coil - - 343 363 -
SMART SM00086 pac_2 IPR001610 PAC motif 434 476 8.1E-5
Pfam PF05228 CHASE4 domain IPR007892 CHASE4 53 215 3.6E-28
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 482 648 5.3E-45
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 485 643 1.0E-41
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 487 641 3.5E-45
Gene3D G3DSA:6.10.340.10 - - - 280 361 1.2E-8
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 485 649 5.3E-57
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 349 474 4.35E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.