Pseudomonas aeruginosa M18, PAM18_5539 (soxG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1901053 sarcosine catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5419
 ECO:0000249
sequence similarity evidence used in automatic assertion		 17951379
Molecular Function GO:0008115 sarcosine oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01375
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1360.120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1901053 sarcosine catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01375
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF103025 Folate-binding domain - - 84 209 7.65E-21
NCBIfam TIGR01375 JCVI: sarcosine oxidase subunit gamma family protein IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric 52 204 1.9E-60
Gene3D G3DSA:3.30.1360.120 Probable tRNA modification gtpase trme; domain 1 IPR027266 GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 38 205 4.7E-56
Pfam PF04268 Sarcosine oxidase, gamma subunit family IPR007375 Sarcosine oxidase, gamma subunit 53 204 8.2E-105
Gene3D G3DSA:3.30.70.1520 Heterotetrameric sarcosine oxidase - - 46 127 4.7E-56

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.