Pseudomonas aeruginosa M18, PAM18_5557

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other M18 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 61 5.5E-12
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 63 267 5.2E-53
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 2 63 6.26E-10
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 65 268 2.06E-45
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 269 8.4E-65
Gene3D G3DSA:3.40.190.290 - - - 69 274 2.2E-41
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 2 38 4.5E-9
CDD cd08419 PBP2_CbbR_RubisCO_like - - 68 264 4.42017E-99

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.