Pseudomonas aeruginosa B136-33, G655_29095

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0070063 RNA polymerase binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5536
 ECO:0000249
sequence similarity evidence used in automatic assertion		 23416301
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00926
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other B136-33 genes in this class
Adaptation, Protection Other B136-33 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33823 RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED - - 15 130 4.7E-29
NCBIfam TIGR02420 JCVI: RNA polymerase-binding protein DksA IPR012784 RNA polymerase-binding transcription factor DksA 15 123 1.5E-39
SUPERFAMILY SSF109635 DnaK suppressor protein DksA, alpha-hairpin domain IPR037187 DksA, N-terminal domain superfamily 1 92 3.92E-24
Coils Coil Coil - - 71 91 -
Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. IPR012784 RNA polymerase-binding transcription factor DksA 11 132 27.460869
Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger IPR000962 Zinc finger, DksA/TraR C4-type 91 126 4.7E-11
FunFam G3DSA:1.20.120.910:FF:000005 RNA polymerase-binding transcription factor DksA - - 1 134 1.0E-88
Gene3D G3DSA:1.20.120.910 - - - 1 134 6.6E-42
SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) - - 93 131 2.71E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.