Pseudomonas aeruginosa RP73, M062_00185

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000284 positive regulation of cellular amino acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0037
 ECO:0000249
sequence similarity evidence used in automatic assertion		 1904858
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0037
 ECO:0000249
sequence similarity evidence used in automatic assertion		 1904858
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other RP73 genes in this class
Amino acid biosynthesis and metabolism Other RP73 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 6.4E-6
Gene3D G3DSA:3.40.190.10 - - - 99 289 9.6E-35
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 7 93 1.7E-20
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 5 89 3.1E-28
CDD cd08482 PBP2_TrpI IPR037418 HTH-type transcriptional regulator TrpI, PBP2 95 289 2.47493E-103
FunFam G3DSA:3.40.190.10:FF:000017 Glycine cleavage system transcriptional activator - - 165 264 4.1E-31
Gene3D G3DSA:3.40.190.10 - - - 165 264 9.6E-35
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 96 293 9.2E-21
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 8 293 2.2E-61
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 66 3.2E-18
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 87 2.72E-20
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 95 294 2.35E-26
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 6.4E-6
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 6.4E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.