Pseudomonas aeruginosa RP73, M062_28435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0042426 | choline catabolic process |
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5397
|
ECO:0000249 sequence similarity evidence used in automatic assertion |
17951379 | |
| Biological Process | GO:0031457 | glycine betaine catabolic process |
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5397
|
ECO:0000249 sequence similarity evidence used in automatic assertion |
17951379 |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.1380.20 | Trafficking protein particle complex subunit 3 | - | - | 28 | 156 | 2.3E-6 |
| Pfam | PF19367 | Domain of unknown function (DUF5943) | IPR045987 | Domain of unknown function DUF5943 | 5 | 98 | 1.4E-49 |
| PANTHER | PTHR35090 | DNA-DIRECTED RNA POLYMERASE SUBUNIT I | - | - | 10 | 175 | 2.8E-32 |
| SMART | SM00989 | V4R_2_a | IPR004096 | 4-vinyl reductase, 4VR | 107 | 175 | 3.7E-4 |
| SUPERFAMILY | SSF111126 | Ligand-binding domain in the NO signalling and Golgi transport | IPR024096 | NO signalling/Golgi transport ligand-binding domain superfamily | 6 | 144 | 2.98E-17 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.