Pseudomonas stutzeri A1501, PST_2273
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psa02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psa02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 31 | 133 | 9.8E-9 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 140 | 209 | 23.0 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 246 | 437 | 4.3E-16 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 251 | 435 | 1.3E-49 |
| Coils | Coil | Coil | - | - | 296 | 316 | - |
| Pfam | PF08447 | PAS fold | IPR013655 | PAS fold-3 | 165 | 250 | 1.3E-14 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 31 | 120 | 3.58871E-11 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 153 | 257 | 3.66E-20 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 250 | 438 | 2.1E-47 |
| Coils | Coil | Coil | - | - | 3 | 23 | - |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 215 | 257 | 0.21 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 32 | 133 | 1.08E-17 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 144 | 261 | 2.4E-12 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 32 | 141 | 1.4E-10 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 274 | 434 | 3.8E-40 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 18 | 87 | 0.015 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 7 | 130 | 3.4E-15 |
| CDD | cd11386 | MCP_signal | - | - | 264 | 434 | 4.72832E-47 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 131 | 249 | 1.7E-15 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 93 | 135 | 5.6 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 152 | 254 | 7.73775E-7 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 241 | 436 | 4.19E-53 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.