Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3533 (phhR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 84 142 7.61E-9
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 460 514 1.08E-7
Pfam PF18024 Helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 466 514 1.3E-13
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 207 450 1.17E-60
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 227 372 6.7E-7
SMART SM00091 pas_2 IPR000014 PAS domain 82 148 5.4E-7
CDD cd00009 AAA - - 212 378 5.34267E-20
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 193 379 5.5E-58
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 198 378 2.5E-69
FunFam G3DSA:3.30.450.20:FF:000052 Sigma-54 dependent transcriptional regulator - - 84 191 3.3E-65
NCBIfam TIGR04381 JCVI: TyrR family helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 469 515 6.1E-22
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 134 514 6.0E-102
Gene3D G3DSA:3.30.70.260 - - - 1 82 2.4E-22
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 2 70 1.62E-7
Gene3D G3DSA:1.10.8.60 - - - 380 452 5.6E-19
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 208 374 2.3E-58
Gene3D G3DSA:3.30.450.20 PAS domain - - 84 191 1.0E-20
Gene3D G3DSA:1.10.10.60 - - - 462 515 1.4E-18
Pfam PF00989 PAS fold IPR013767 PAS fold 83 132 1.3E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.