Pseudomonas stutzeri DSM 4166, PSTAA_2301

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psr02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00086 pac_2 IPR001610 PAC motif 93 135 6.1
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 238 394 1.96E-27
Coils Coil Coil - - 3 23 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 7 147 3.9E-16
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 153 257 2.97E-20
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 144 261 2.0E-12
CDD cd00130 PAS IPR000014 PAS domain 31 120 6.30132E-11
CDD cd00130 PAS IPR000014 PAS domain 152 254 7.17617E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 32 141 2.1E-10
SMART SM00091 pas_2 IPR000014 PAS domain 140 209 23.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 148 307 3.2E-18
SMART SM00091 pas_2 IPR000014 PAS domain 18 87 0.031
Gene3D G3DSA:1.10.287.950 - - - 321 396 7.8E-16
Pfam PF13426 PAS domain IPR000014 PAS domain 31 133 5.2E-9
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 274 394 1.2E-15
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 146 262 3.2E-24
Coils Coil Coil - - 296 316 -
Pfam PF08447 PAS fold IPR013655 PAS fold-3 165 250 1.1E-14
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 32 133 1.92E-17
SMART SM00086 pac_2 IPR001610 PAC motif 215 257 0.21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.