Pseudomonas stutzeri CCUG 29243, A458_01695

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.920
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004802 transketolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psc01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc superpathway of glucose and xylose degradation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc Rubisco shunt InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psc00030 Pentose phosphate pathway 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc formaldehyde assimilation II (assimilatory RuMP Cycle) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psc01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc thiazole biosynthesis I (facultative anaerobic bacteria) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc thiazole biosynthesis II (aerobic bacteria) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc methylerythritol phosphate pathway II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 5 319 2.05E-118
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 335 525 3.02E-68
Gene3D G3DSA:3.40.50.970 - - - 326 537 6.0E-87
Pfam PF02780 Transketolase, C-terminal domain IPR033248 Transketolase, C-terminal domain 547 655 1.0E-17
Pfam PF00456 Transketolase, thiamine diphosphate binding domain IPR005474 Transketolase, N-terminal 5 333 0.0
CDD cd07033 TPP_PYR_DXS_TK_like - - 358 520 1.50711E-56
FunFam G3DSA:3.40.50.920:FF:000003 Transketolase - - 538 664 1.9E-51
SUPERFAMILY SSF52922 TK C-terminal domain-like IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II 535 664 1.1E-42
SMART SM00861 Transket_pyr_3 IPR005475 Transketolase-like, pyrimidine-binding domain 354 525 1.4E-68
CDD cd02012 TPP_TK IPR005474 Transketolase, N-terminal 9 273 0.0
FunFam G3DSA:3.40.50.970:FF:000003 Transketolase - - 326 537 5.3E-91
NCBIfam TIGR00232 JCVI: transketolase IPR005478 Transketolase, bacterial-like 6 663 0.0
FunFam G3DSA:3.40.50.970:FF:000004 Transketolase - - 2 325 0.0
Pfam PF02779 Transketolase, pyrimidine binding domain IPR005475 Transketolase-like, pyrimidine-binding domain 353 524 2.8E-45
PANTHER PTHR43522 TRANSKETOLASE IPR033247 Transketolase family 2 663 0.0
Gene3D G3DSA:3.40.50.970 - - - 1 325 0.0
Gene3D G3DSA:3.40.50.920 - IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II 538 665 8.7E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.