Pseudomonas stutzeri CCUG 29243, A458_20480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006278 RNA-dependent DNA biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03487
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03487
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003964 RNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03487
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56672 DNA/RNA polymerases IPR043502 DNA/RNA polymerase superfamily 48 234 9.45E-7
Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IPR000477 Reverse transcriptase domain 49 248 3.8E-21
PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 41 54 5.1E-12
PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 186 197 5.1E-12
PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 244 250 5.1E-12
PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 153 166 5.1E-12
PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 105 123 5.1E-12
CDD cd03487 RT_Bac_retron_II IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA 49 268 1.40788E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.