Pseudomonas stutzeri DSM 10701, PSJM300_00205

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01189
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001510 RNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53335
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008649 rRNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR22807 NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING IPR023267 RNA (C5-cytosine) methyltransferase 126 435 4.1E-62
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 231 434 5.5E-65
Coils Coil Coil - - 284 304 -
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 318 330 2.4E-28
SUPERFAMILY SSF48013 NusB-like IPR035926 NusB-like superfamily 4 149 1.06E-32
FunFam G3DSA:3.40.50.150:FF:000022 Ribosomal RNA small subunit methyltransferase B - - 234 434 2.4E-73
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 222 236 2.4E-28
Pfam PF01029 NusB family IPR006027 NusB/RsmB/TIM44 4 126 7.8E-19
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 138 434 6.54E-73
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 416 433 2.4E-28
NCBIfam TIGR00563 JCVI: 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB IPR004573 rRNA small subunit methyltransferase B 10 433 2.2E-124
Gene3D G3DSA:1.10.940.10 - IPR035926 NusB-like superfamily 3 143 2.5E-31
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 251 261 2.4E-28
CDD cd02440 AdoMet_MTases - - 249 373 5.06002E-7
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 368 384 2.4E-28
Gene3D G3DSA:1.10.287.730 Helix hairpin bin - - 146 172 1.0E-9
Gene3D G3DSA:3.30.70.1170 Sun protein; domain 3 - - 173 230 5.3E-23
FunFam G3DSA:3.30.70.1170:FF:000002 Ribosomal RNA small subunit methyltransferase B - - 173 230 7.8E-21
Pfam PF01189 16S rRNA methyltransferase RsmB/F IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type 240 431 1.3E-61

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.