Pseudomonas stutzeri DSM 10701, PSJM300_03180

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04051
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc pyrroloquinoline quinone biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 1 382 0.0
Pfam PF13353 4Fe-4S single cluster domain - - 27 138 1.1E-9
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 27 373 6.3E-81
NCBIfam TIGR04051 JCVI: heme d1 biosynthesis radical SAM protein NirJ IPR023992 Pre-heme d1 synthase NirJ 30 381 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 26 354 4.84E-69
CDD cd21123 SPASM_MftC-like - - 281 374 5.97992E-25
PIRSF PIRSF037420 PqqE IPR017200 Coenzyme PQQ synthesis protein E-like 19 390 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 26 270 3.8E-47
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 36 176 5.6E-23
SFLD SFLDF00393 heme D1 biosynthesis (NirJ-like) IPR023992 Pre-heme d1 synthase NirJ 1 382 0.0
CDD cd01335 Radical_SAM - - 34 232 1.01754E-23
FunFam G3DSA:3.20.20.70:FF:000188 Mycofactocin radical SAM maturase MftC - - 25 334 1.1E-89
NCBIfam TIGR04085 JCVI: SPASM domain IPR023885 4Fe4S-binding SPASM domain 290 373 3.3E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.