Pseudomonas stutzeri RCH2, Psest_0248
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PR00455
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 11 | 57 | 3.5E-14 |
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 4 | 212 | 1.3E-72 |
| PANTHER | PTHR30055 | HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR | - | - | 3 | 161 | 1.3E-19 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 3 | 76 | 1.41E-17 |
| Pfam | PF13972 | Bacterial transcriptional repressor | IPR025722 | Bacterial transcriptional repressor TetR | 60 | 201 | 5.7E-41 |
| PRINTS | PR00455 | TetR bacterial regulatory protein HTH signature | IPR001647 | DNA-binding HTH domain, TetR-type | 32 | 55 | 2.5E-9 |
| PRINTS | PR00455 | TetR bacterial regulatory protein HTH signature | IPR001647 | DNA-binding HTH domain, TetR-type | 11 | 24 | 2.5E-9 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.