Pseudomonas stutzeri RCH2, Psest_4008

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00989 PAS fold IPR013767 PAS fold 315 426 6.6E-13
FunFam G3DSA:3.30.450.20:FF:000099 Sensory box sensor histidine kinase - - 312 426 2.4E-25
SUPERFAMILY SSF55781 GAF domain-like - - 890 1041 3.27E-21
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1463 1573 3.9E-18
Coils Coil Coil - - 1030 1050 -
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 1029 1154 1.54E-28
SMART SM00086 pac_2 IPR001610 PAC motif 387 429 3.4E-6
CDD cd00130 PAS IPR000014 PAS domain 450 558 3.62328E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 720 841 7.4E-20
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1458 1578 1.08E-27
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 1208 1274 1.42535E-8
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1386 1396 5.2E-13
FunFam G3DSA:3.30.450.20:FF:000099 Sensory box sensor histidine kinase - - 1039 1153 3.4E-35
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 715 844 4.71E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 184 307 1.0E-20
SMART SM00086 pac_2 IPR001610 PAC motif 804 846 81.0
SMART SM00091 pas_2 IPR000014 PAS domain 188 255 7.6E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 442 570 6.3E-22
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 32 188 3.8E-10
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 181 301 2.09E-22
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 438 565 7.0E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 1038 1163 9.3E-15
SMART SM00091 pas_2 IPR000014 PAS domain 315 381 4.1E-9
SMART SM00086 pac_2 IPR001610 PAC motif 262 303 36.0
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1461 1573 1.8E-20
Pfam PF01590 GAF domain IPR003018 GAF domain 890 1025 5.6E-11
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1320 1438 1.6E-18
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1399 1417 5.2E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 301 426 2.44E-26
SMART SM00086 pac_2 IPR001610 PAC motif 1114 1156 1.0E-7
Pfam PF13426 PAS domain IPR000014 PAS domain 201 302 6.6E-11
CDD cd00130 PAS IPR000014 PAS domain 199 300 2.75898E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 189 314 8.3E-27
Pfam PF08447 PAS fold IPR013655 PAS fold-3 751 839 7.2E-8
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 1210 1278 7.3E-8
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1423 1436 5.2E-13
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1269 1441 4.19E-38
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 427 559 8.03E-22
CDD cd00130 PAS IPR000014 PAS domain 1051 1153 2.9249E-11
SMART SM00091 pas_2 IPR000014 PAS domain 728 796 190.0
Coils Coil Coil - - 700 720 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 1037 1154 2.2E-29
CDD cd18161 REC_hyHK_blue-like - - 1463 1564 2.00258E-34
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1319 1439 4.7E-26
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 872 1036 1.8E-17
SMART SM00091 pas_2 IPR000014 PAS domain 441 508 4.0E-9
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1368 1382 5.2E-13
SMART SM00065 gaf_1 IPR003018 GAF domain 46 188 0.0054
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 311 433 4.3E-17
SUPERFAMILY SSF55781 GAF domain-like - - 51 191 1.2E-13
Coils Coil Coil - - 843 880 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 315 441 1.1E-25
SMART SM00086 pac_2 IPR001610 PAC motif 519 561 0.0014
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 1212 1277 1.3E-8
Gene3D G3DSA:1.10.287.130 - - - 1202 1277 7.9E-18
PANTHER PTHR43304 PHYTOCHROME-LIKE PROTEIN CPH1 - - 916 1172 1.1E-92
SUPERFAMILY SSF55781 GAF domain-like - - 593 727 4.14E-5
Pfam PF08447 PAS fold IPR013655 PAS fold-3 1067 1150 1.0E-14
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1279 1443 2.7E-41
CDD cd00130 PAS IPR000014 PAS domain 324 426 3.63056E-13
Coils Coil Coil - - 1160 1187 -
Pfam PF00989 PAS fold IPR013767 PAS fold 443 558 5.8E-13
SMART SM00091 pas_2 IPR000014 PAS domain 1042 1108 8.0E-7
SMART SM00065 gaf_1 IPR003018 GAF domain 889 1038 3.1E-12
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 1199 1276 1.02E-10
Gene3D G3DSA:3.40.50.2300 - - - 1457 1580 3.5E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.