Pseudomonas mendocina NK-01, MDS_0028

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA - - 211 371 7.39728E-15
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 228 373 3.6E-10
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 573 790 1.4E-65
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 669 687 3.2E-30
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 374 567 1.4E-51
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 624 642 3.2E-30
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 161 2.8E-39
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 181 372 3.3E-72
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 698 716 3.2E-30
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 19 865 0.0
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 573 790 4.0E-78
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 792 884 1.6E-7
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 569 858 4.52E-61
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 372 464 1.5E-28
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 620 776 6.4E-9
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 13 131 9.22E-17
Gene3D G3DSA:1.10.8.60 - - - 792 889 4.6E-7
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 189 515 1.7E-72
Coils Coil Coil - - 473 507 -
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 876 0.0
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 792 866 3.8E-11
Coils Coil Coil - - 442 462 -
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 731 745 3.2E-30
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 180 372 5.0E-82
Coils Coil Coil - - 526 546 -
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 582 790 5.36104E-81
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 619 785 3.9E-38
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 233 366 5.9E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.