Pseudomonas mendocina NK-01, MDS_0237
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0005975 | carbohydrate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03133
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016831 | carboxy-lyase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03133
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | 3-hydroxypropanoate/4-hydroxybutanate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | glyoxylate assimilation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 3-hydroxypropanoate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | candicidin biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | fatty acid biosynthesis initiation I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | malonate degradation II (biotin-dependent) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF01039 | Carboxyl transferase domain | IPR034733 | Acetyl-CoA carboxylase | 18 | 204 | 9.9E-15 |
| NCBIfam | TIGR03133 | JCVI: biotin-independent malonate decarboxylase subunit beta | IPR017556 | Biotin-independent malonate decarboxylase, beta subunit | 13 | 281 | 1.0E-116 |
| SUPERFAMILY | SSF52096 | ClpP/crotonase | IPR029045 | ClpP/crotonase-like domain superfamily | 3 | 234 | 6.08E-40 |
| PANTHER | PTHR42995 | ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTIC | - | - | 18 | 199 | 4.5E-20 |
| Gene3D | G3DSA:3.90.226.10 | - | - | - | 1 | 239 | 5.7E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.