Pseudomonas mendocina NK-01, MDS_0238
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0005975 | carbohydrate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03134
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | malonate degradation II (biotin-dependent) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF06833 | Malonate decarboxylase gamma subunit (MdcE) | - | - | 12 | 268 | 1.6E-94 |
| NCBIfam | TIGR03134 | JCVI: biotin-independent malonate decarboxylase subunit gamma | IPR009648 | Biotin-dependent malonate decarboxylase, gamma subunit | 9 | 268 | 2.1E-98 |
| Gene3D | G3DSA:3.90.226.10 | - | - | - | 72 | 256 | 1.3E-15 |
| SUPERFAMILY | SSF52096 | ClpP/crotonase | IPR029045 | ClpP/crotonase-like domain superfamily | 25 | 243 | 8.03E-17 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.