Pseudomonas mendocina NK-01, MDS_0458

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00651
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.420.140:FF:000002 Putative pre-16S rRNA nuclease - - 6 142 1.7E-62
Pfam PF03652 Holliday junction resolvase IPR005227 Putative pre-16S rRNA nuclease 9 139 4.3E-40
NCBIfam TIGR00250 JCVI: Holliday junction resolvase RuvX IPR005227 Putative pre-16S rRNA nuclease 10 139 1.4E-41
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 8 140 5.01E-41
SMART SM00732 rnase_8s IPR006641 YqgF/RNase H-like domain 7 107 2.7E-39
CDD cd16964 YqgF IPR005227 Putative pre-16S rRNA nuclease 9 140 1.44318E-56
PANTHER PTHR33317 POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN IPR005227 Putative pre-16S rRNA nuclease 7 140 7.6E-24
Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. IPR005227 Putative pre-16S rRNA nuclease 7 142 24.533892
Gene3D G3DSA:3.30.420.140 - IPR037027 YqgF/RNase H-like domain superfamily 8 143 7.4E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.