Pseudomonas mendocina NK-01, MDS_1883

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0017004 cytochrome complex assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 195 218 3.1E-68
NCBIfam TIGR01190 JCVI: heme exporter protein CcmB IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria 8 217 7.2E-85
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 134 157 3.1E-68
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 29 50 3.1E-68
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 55 72 3.1E-68
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 103 121 3.1E-68
Pfam PF03379 CcmB protein IPR003544 Cytochrome c-type biogenesis protein CcmB 6 218 9.1E-72
PIRSF PIRSF002764 CcmB IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria 1 222 8.0E-81
PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature - - 78 101 3.1E-68
PANTHER PTHR30070 HEME EXPORTER PROTEIN B IPR003544 Cytochrome c-type biogenesis protein CcmB 1 208 6.4E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.