Pseudomonas mendocina NK-01, MDS_1884

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01578
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0017004 cytochrome complex assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01578
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 101 121 6.3E-59
Pfam PF01578 Cytochrome C assembly protein IPR002541 Cytochrome c assembly protein 14 185 2.0E-26
PANTHER PTHR30071 HEME EXPORTER PROTEIN C IPR045062 Cytochrome c-type biogenesis protein CcsA/CcmC 25 207 5.3E-33
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 122 142 6.3E-59
NCBIfam TIGR01191 JCVI: heme ABC transporter permease CcmC IPR003557 Cytochrome c-type biogenesis protein CcmC 46 229 1.1E-80
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 205 229 6.3E-59
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 63 83 6.3E-59
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 46 63 6.3E-59
PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature IPR003557 Cytochrome c-type biogenesis protein CcmC 157 183 6.3E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.