Pseudomonas mendocina NK-01, MDS_1953
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0044249 | cellular biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00524
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0044237 | cellular metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF01008
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk00270 | Cysteine and methionine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00512 | JCVI: S-methyl-5-thioribose-1-phosphate isomerase | IPR005251 | Methylthioribose-1-phosphate isomerase | 12 | 341 | 1.1E-116 |
| NCBIfam | TIGR00524 | JCVI: S-methyl-5-thioribose-1-phosphate isomerase | IPR011559 | Initiation factor 2B alpha/beta/delta | 38 | 341 | 2.4E-81 |
| SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | IPR037171 | NagB/RpiA transferase-like | 8 | 344 | 7.44E-101 |
| Gene3D | G3DSA:1.20.120.420 | - | IPR027363 | Methylthioribose-1-phosphate isomerase, N-terminal | 10 | 158 | 8.7E-37 |
| FunFam | G3DSA:3.40.50.10470:FF:000006 | Methylthioribose-1-phosphate isomerase | - | - | 158 | 354 | 6.5E-74 |
| PANTHER | PTHR43475 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | - | - | 9 | 348 | 1.8E-99 |
| Gene3D | G3DSA:3.40.50.10470 | - | IPR042529 | Initiation factor 2B-like, C-terminal | 159 | 356 | 8.2E-62 |
| FunFam | G3DSA:1.20.120.420:FF:000008 | Methylthioribose-1-phosphate isomerase | - | - | 10 | 158 | 4.5E-58 |
| Hamap | MF_01678 | Putative methylthioribose-1-phosphate isomerase [mtnA]. | IPR005251 | Methylthioribose-1-phosphate isomerase | 11 | 351 | 60.253838 |
| Pfam | PF01008 | Initiation factor 2 subunit family | IPR000649 | Initiation factor 2B-related | 53 | 341 | 1.2E-60 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.