Pseudomonas mendocina NK-01, MDS_2527

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 171 221 7.35E-6
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 187 269 1.0E-27
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 193 270 7.7E-21
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 37 271 3.1E-35
Gene3D G3DSA:1.10.10.60 - - - 230 279 1.5E-11
Pfam PF12852 Cupin IPR032783 AraC-type transcription regulator, ligand-binding domain 2 155 1.8E-19
Gene3D G3DSA:1.10.10.60 - - - 175 229 2.8E-11
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 223 271 2.87E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.