Pseudomonas mendocina NK-01, MDS_3043

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 153 644 3.1E-61
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 241 395 4.55E-20
Pfam PF16448 LapD/MoxY periplasmic domain IPR032244 LapD/MoxY, periplasmic domain 23 145 1.7E-39
CDD cd01948 EAL IPR001633 EAL domain 414 644 9.28701E-49
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 233 389 3.4E-12
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 408 646 6.9E-52
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 236 390 3.0E-21
Gene3D G3DSA:3.30.110.200 - - - 22 98 2.1E-30
Gene3D G3DSA:6.10.340.10 - - - 150 223 3.4E-7
SMART SM00052 duf2_2 IPR001633 EAL domain 408 644 8.0E-13
Gene3D G3DSA:6.20.270.20 LapD/MoxY periplasmic domain IPR042461 LapD/MoxY periplasmic domain, C-terminal 101 149 2.0E-22
SMART SM00304 HAMP_11 IPR003660 HAMP domain 171 223 8.8E-6
SMART SM00267 duf1_3 IPR000160 GGDEF domain 225 395 7.3E-20
CDD cd06225 HAMP - - 174 218 0.00218333
Pfam PF00563 EAL domain IPR001633 EAL domain 416 642 2.9E-46
Pfam PF00672 HAMP domain IPR003660 HAMP domain 168 219 3.3E-6
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 415 645 4.84E-47
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 224 396 5.1E-32
CDD cd01949 GGDEF IPR000160 GGDEF domain 237 390 5.88255E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.