Pseudomonas mendocina NK-01, MDS_3410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016887 | ATPase activity |
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF18024
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008134 | transcription factor binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 460 | 515 | 8.06E-9 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 1 | 82 | 5.6E-24 |
| Pfam | PF01842 | ACT domain | IPR002912 | ACT domain | 3 | 37 | 8.6E-7 |
| FunFam | G3DSA:1.10.10.60:FF:000112 | TyrR family transcriptional regulator | - | - | 459 | 516 | 2.0E-28 |
| Gene3D | G3DSA:3.40.50.300 | - | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 193 | 379 | 6.8E-58 |
| FunFam | G3DSA:3.40.50.300:FF:000006 | DNA-binding transcriptional regulator NtrC | - | - | 198 | 378 | 2.3E-69 |
| CDD | cd00009 | AAA | - | - | 214 | 378 | 1.91519E-19 |
| Pfam | PF18024 | Helix-turn-helix domain | IPR030828 | TyrR family, helix-turn-helix domain | 468 | 514 | 3.6E-14 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 2 | 72 | 3.16E-8 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 91 | 149 | 1.15029E-4 |
| Pfam | PF13188 | PAS domain | IPR000014 | PAS domain | 86 | 137 | 2.6E-4 |
| FunFam | G3DSA:3.30.70.260:FF:000042 | Sigma-54 dependent transcriptional regulator | - | - | 1 | 83 | 7.7E-54 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 84 | 145 | 5.9E-8 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 82 | 148 | 4.2E-6 |
| SMART | SM00382 | AAA_5 | IPR003593 | AAA+ ATPase domain | 227 | 372 | 8.1E-5 |
| PANTHER | PTHR32071 | TRANSCRIPTIONAL REGULATORY PROTEIN | - | - | 150 | 515 | 3.5E-103 |
| FunFam | G3DSA:3.30.450.20:FF:000052 | Sigma-54 dependent transcriptional regulator | - | - | 84 | 191 | 4.7E-65 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 84 | 191 | 3.2E-19 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 207 | 449 | 4.48E-60 |
| Pfam | PF00158 | Sigma-54 interaction domain | IPR002078 | RNA polymerase sigma factor 54 interaction domain | 208 | 374 | 2.4E-58 |
| Gene3D | G3DSA:1.10.8.60 | - | - | - | 380 | 453 | 4.8E-19 |
| NCBIfam | TIGR04381 | JCVI: TyrR family helix-turn-helix domain | IPR030828 | TyrR family, helix-turn-helix domain | 469 | 516 | 2.0E-22 |
| Gene3D | G3DSA:1.10.10.60 | - | - | - | 462 | 516 | 8.0E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.