Pseudomonas mendocina NK-01, MDS_3994
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004089 | carbonate dehydratase activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd00884
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008270 | zinc ion binding |
Inferred from Sequence Model
Term mapped from: InterPro:cd00884
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | glyoxylate assimilation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | C4 photosynthetic carbon assimilation cycle, NADP-ME type | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 3-hydroxypropanoate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | C4 photosynthetic carbon assimilation cycle, NAD-ME type | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 3-hydroxypropanoate/4-hydroxybutanate cycle | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pmk00910 | Nitrogen metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | C4 photosynthetic carbon assimilation cycle, PEPCK type | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00947 | Pro_CA_2 | IPR001765 | Carbonic anhydrase | 50 | 217 | 3.9E-64 |
| FunFam | G3DSA:3.40.1050.10:FF:000003 | Carbonic anhydrase | - | - | 19 | 225 | 3.4E-73 |
| Pfam | PF00484 | Carbonic anhydrase | IPR001765 | Carbonic anhydrase | 57 | 212 | 4.4E-50 |
| Gene3D | G3DSA:3.40.1050.10 | Carbonic anhydrase | IPR036874 | Carbonic anhydrase superfamily | 9 | 226 | 8.9E-72 |
| CDD | cd00884 | beta_CA_cladeB | IPR045066 | Beta carbonic anhydrases, cladeB | 30 | 216 | 7.2318E-102 |
| SUPERFAMILY | SSF53056 | beta-carbonic anhydrase, cab | IPR036874 | Carbonic anhydrase superfamily | 19 | 226 | 2.22E-67 |
| PANTHER | PTHR11002 | CARBONIC ANHYDRASE | IPR001765 | Carbonic anhydrase | 17 | 218 | 4.5E-63 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.