Pseudomonas mendocina NK-01, MDS_4312
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0042834 | peptidoglycan binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF04225
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04225 | Opacity-associated protein A LysM-like domain | IPR007340 | Opacity-associated protein A | 91 | 167 | 1.8E-8 |
| Gene3D | G3DSA:3.10.450.350 | - | - | - | 86 | 176 | 1.7E-17 |
| Coils | Coil | Coil | - | - | 55 | 75 | - |
| Pfam | PF19425 | Csd3 second domain | IPR045834 | Csd3-like, second N-terminal domain | 184 | 302 | 6.3E-14 |
| Gene3D | G3DSA:3.10.450.350 | - | - | - | 190 | 440 | 1.0E-92 |
| Gene3D | G3DSA:2.70.70.10 | Glucose Permease (Domain IIA) | IPR011055 | Duplicated hybrid motif | 286 | 418 | 1.0E-92 |
| CDD | cd12797 | M23_peptidase | - | - | 316 | 401 | 5.26394E-41 |
| PANTHER | PTHR21666 | PEPTIDASE-RELATED | - | - | 248 | 414 | 5.2E-43 |
| FunFam | G3DSA:2.70.70.10:FF:000002 | Murein DD-endopeptidase MepM | - | - | 288 | 417 | 9.4E-52 |
| SUPERFAMILY | SSF51261 | Duplicated hybrid motif | IPR011055 | Duplicated hybrid motif | 163 | 412 | 6.8E-75 |
| Pfam | PF01551 | Peptidase family M23 | IPR016047 | Peptidase M23 | 315 | 411 | 2.2E-33 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.