Pseudomonas mendocina NK-01, MDS_4341

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0015594 ATPase-coupled putrescine transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015417 ATPase-coupled polyamine transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015846 polyamine transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 6 246 2.59E-87
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 220 1.4E-69
CDD cd03300 ABC_PotA_N IPR017879 PotA, ATP-binding domain 7 239 0.0
FunFam G3DSA:3.40.50.300:FF:000042 Maltose/maltodextrin ABC transporter, ATP-binding protein - - 4 242 1.3E-99
NCBIfam TIGR01187 JCVI: polyamine ABC transporter ATP-binding protein IPR005893 Spermidine/putrescine import ATP-binding protein PotA-like 38 356 3.7E-113
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 24 165 6.6E-35
Pfam PF08402 TOBE domain IPR013611 Transport-associated OB, type 2 282 359 6.4E-17
PANTHER PTHR42781 SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA - - 1 357 5.8E-117
Gene3D G3DSA:2.40.50.100 - - - 222 309 2.7E-13
SUPERFAMILY SSF50331 MOP-like IPR008995 Molybdate/tungstate binding, C-terminal 240 359 1.36E-18
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 32 215 3.7E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.