Pseudomonas mendocina NK-01, MDS_4346
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0009058 | biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF00483
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk00520 | Amino sugar and nucleotide sugar metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd06422 | NTP_transferase_like_1 | - | - | 2 | 214 | 8.03909E-90 |
| Coils | Coil | Coil | - | - | 208 | 223 | - |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | IPR029044 | Nucleotide-diphospho-sugar transferases | 1 | 219 | 1.82E-54 |
| Pfam | PF00483 | Nucleotidyl transferase | IPR005835 | Nucleotidyl transferase domain | 2 | 125 | 1.2E-20 |
| PANTHER | PTHR43584 | NUCLEOTIDYL TRANSFERASE | - | - | 1 | 222 | 2.4E-42 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | IPR029044 | Nucleotide-diphospho-sugar transferases | 1 | 223 | 1.9E-61 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.