Pseudomonas mendocina NK-01, MDS_4351

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00607
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00607
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008649 rRNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00650
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000154 rRNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00650
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00755 JCVI: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA IPR011530 Ribosomal RNA adenine dimethylase 6 259 4.1E-84
Gene3D G3DSA:1.10.8.100 - IPR023165 rRNA adenine dimethylase-like, C-terminal 197 261 3.6E-23
Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. IPR011530 Ribosomal RNA adenine dimethylase 6 261 57.321167
PANTHER PTHR11727 DIMETHYLADENOSINE TRANSFERASE IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm 6 260 4.6E-66
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 5 260 2.61E-79
FunFam G3DSA:1.10.8.100:FF:000001 Ribosomal RNA small subunit methyltransferase A - - 198 263 2.0E-23
Pfam PF00398 Ribosomal RNA adenine dimethylase IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm 6 258 2.8E-64
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 1 196 1.7E-69
SMART SM00650 rADcneu6 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal 22 194 5.4E-89

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.