Pseudomonas syringae pv. tomato DC3000, PSPTO_2228 (fimD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00577
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015473 fimbrial usher porin activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00577
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009297 pilus assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00577
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF141729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13954 PapC N-terminal domain IPR025885 PapC, N-terminal domain 40 188 7.2E-40
PANTHER PTHR30451 OUTER MEMBRANE USHER PROTEIN IPR000015 Outer membrane usher protein 21 836 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 485 506 -
SUPERFAMILY SSF141729 FimD N-terminal domain-like IPR037224 PapC, N-terminal domain superfamily 70 180 3.4E-30
Gene3D G3DSA:2.60.40.2070 - IPR043142 PapC-like, C-terminal domain superfamily 754 837 3.6E-18
Pfam PF00577 Outer membrane usher protein IPR000015 Outer membrane usher protein 205 747 0.0
Gene3D G3DSA:2.60.40.2610 Outer membrane usher protein FimD, plug domain IPR042186 Outer membrane usher protein FimD, plug domain 662 751 5.7E-27
Pfam PF13953 PapC C-terminal domain IPR025949 PapC-like, C-terminal domain 758 818 1.5E-16
MobiDBLite mobidb-lite consensus disorder prediction - - 594 620 -
Gene3D G3DSA:3.10.20.410 - IPR037224 PapC, N-terminal domain superfamily 39 165 1.2E-26
Gene3D G3DSA:2.60.40.3110 - - - 274 362 6.8E-30
MobiDBLite mobidb-lite consensus disorder prediction - - 485 504 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.