Pseudomonas syringae pv. tomato DC3000, PSPTO_3403
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04717 | Type VI secretion system/phage-baseplate injector OB domain | IPR006531 | Gp5/Type VI secretion system Vgr protein, OB-fold domain | 19 | 86 | 5.4E-15 |
| Gene3D | G3DSA:2.40.50.230 | - | IPR037026 | Vgr protein, OB-fold domain superfamily | 3 | 89 | 8.4E-20 |
| FunFam | G3DSA:2.40.50.230:FF:000004 | Baseplate assembly protein V | - | - | 3 | 89 | 1.5E-59 |
| NCBIfam | TIGR01644 | JCVI: phage baseplate assembly protein V | IPR013046 | Phage baseplate assembly protein V/Gp45 | 8 | 187 | 6.9E-40 |
| Gene3D | G3DSA:6.20.150.10 | - | - | - | 92 | 163 | 9.5E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.