Pseudomonas syringae pv. tomato DC3000, PSPTO_4120

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004386 helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:000437 ATP-dependent DNA helicase DinG - - 527 714 5.2E-77
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 304 7.2E-39
Coils Coil Coil - - 133 153 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 57 689 3.28E-16
Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. IPR039000 ATP-dependent DNA helicase DinG 32 714 38.133076
PANTHER PTHR11472 DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER IPR045028 Helicase superfamily 1/2, DinG/Rad3-like 25 712 2.7E-32
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 528 712 6.0E-30
Pfam PF13307 Helicase C-terminal domain IPR006555 ATP-dependent helicase, C-terminal 553 708 9.0E-34
FunFam G3DSA:3.40.50.300:FF:001058 ATP-dependent DNA helicase DinG - - 23 304 0.0
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 21 314 0.0096
SMART SM00491 Cxpdneu3 IPR006555 ATP-dependent helicase, C-terminal 562 695 1.4E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.