Pseudomonas syringae pv. tomato DC3000, PSPTO_5087 (mdcA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016740 | transferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01110
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | malonate degradation II (biotin-dependent) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | malonate degradation I (biotin-independent) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43293 | ACETATE COA-TRANSFERASE YDIF | - | - | 14 | 558 | 4.3E-94 |
| Gene3D | G3DSA:3.40.1080.10 | - | - | - | 38 | 244 | 3.3E-16 |
| SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | IPR037171 | NagB/RpiA transferase-like | 38 | 282 | 6.63E-33 |
| NCBIfam | TIGR01110 | JCVI: malonate decarboxylase subunit alpha | IPR005777 | Acetyl-S-ACP:malonate ACP transferase | 11 | 558 | 0.0 |
| SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | IPR037171 | NagB/RpiA transferase-like | 230 | 502 | 7.33E-21 |
| Pfam | PF16957 | Malonate decarboxylase, alpha subunit, transporter | IPR005777 | Acetyl-S-ACP:malonate ACP transferase | 11 | 558 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.