Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0678 (speD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03331
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008295 spermidine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03331
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp00270 Cysteine and methionine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.60.90.10 - - - 35 185 5.9E-26
PIRSF PIRSF001356 SAM_decarboxylas IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 0.0
PANTHER PTHR33866 S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic 1 194 4.4E-54
Pfam PF02675 S-adenosylmethionine decarboxylase IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic 40 170 2.3E-30
NCBIfam TIGR03331 JCVI: adenosylmethionine decarboxylase IPR009165 S-adenosylmethionine decarboxylase, bacterial 4 262 0.0
SUPERFAMILY SSF56276 S-adenosylmethionine decarboxylase IPR016067 S-adenosylmethionine decarboxylase, core 43 175 3.57E-25
Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 167.012451

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.