Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3122

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:1.10.10.60	-	-	-	218	326	2.6E-25
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	275	323	1.48E-10
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	245	323	1.0E-18
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	291	306	9.0E-5
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	222	273	1.21E-8
Pfam	PF12852	Cupin	IPR032783	AraC-type transcription regulator, ligand-binding domain	18	207	5.0E-28
PANTHER	PTHR46796	HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED	-	-	57	324	1.6E-35
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	239	322	5.4E-27
PRINTS	PR00032	AraC bacterial regulatory protein HTH signature	IPR020449	Transcription regulator HTH, AraC- type	306	322	9.0E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.