Pseudomonas fulva 12-X, Psefu_4226

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0046653	tetrahydrofolate metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF037980	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.1360.120	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008115	sarcosine oxidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF037980	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016491	oxidoreductase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07992	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
MetaCyc		glycine betaine degradation I	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	pfv01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfv00260	Glycine, serine and threonine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
MetaCyc		creatinine degradation II	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF101790	Aminomethyltransferase beta-barrel domain	IPR029043	Glycine cleavage T-protein/YgfZ, C-terminal	907	1003	1.28E-17
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	373	389	2.9E-12
Gene3D	G3DSA:3.30.1360.120	Probable tRNA modification gtpase trme; domain 1	IPR027266	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	615	1005	1.1E-129
Gene3D	G3DSA:3.50.50.60	-	IPR036188	FAD/NAD(P)-binding domain superfamily	295	423	2.7E-22
Gene3D	G3DSA:3.50.50.60	-	IPR036188	FAD/NAD(P)-binding domain superfamily	172	484	2.7E-22
Gene3D	G3DSA:1.10.10.1100	-	IPR041854	BFD-like [2Fe-2S]-binding domain superfamily	522	586	2.2E-5
Gene3D	G3DSA:3.10.20.440	-	IPR042204	2Fe-2S iron-sulfur cluster binding domain, N-terminal	9	103	2.3E-21
Pfam	PF07992	Pyridine nucleotide-disulphide oxidoreductase	IPR023753	FAD/NAD(P)-binding domain	172	435	7.4E-14
PIRSF	PIRSF037980	Sarcos_oxid_alpha	IPR006277	Sarcosine oxidase, alpha subunit	1	1005	0.0
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	283	301	1.8E-9
SUPERFAMILY	SSF103025	Folate-binding domain	-	-	614	896	4.08E-92
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	284	292	2.9E-12
Pfam	PF01571	Aminomethyltransferase folate-binding domain	IPR006222	Aminomethyltransferase, folate-binding domain	620	885	8.4E-75
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	450	472	1.8E-9
Pfam	PF13510	2Fe-2S iron-sulfur cluster binding domain	-	-	17	102	9.2E-22
PANTHER	PTHR43757	AMINOMETHYLTRANSFERASE	IPR028896	Aminomethyltransferase-like	607	996	1.7E-56
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	IPR036188	FAD/NAD(P)-binding domain superfamily	167	470	1.3E-35
NCBIfam	TIGR01372	JCVI: sarcosine oxidase subunit alpha family protein	IPR006277	Sarcosine oxidase, alpha subunit	2	1005	0.0
Pfam	PF17806	Sarcosine oxidase A3 domain	IPR041117	SoxA, A3 domain	522	605	1.2E-30
Pfam	PF08669	Glycine cleavage T-protein C-terminal barrel domain	IPR013977	Glycine cleavage T-protein, C-terminal barrel domain	911	997	1.9E-19
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	172	194	2.9E-12
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	173	192	1.8E-9
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	460	478	2.9E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.