Pseudomonas fulva 12-X, Psefu_4395

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10415
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10415
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006531 aspartate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00839
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008797 aspartate ammonia-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00839
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc partial TCA cycle (obligate autotrophs) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc superpathway of glyoxylate cycle and fatty acid degradation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc TCA cycle VII (acetate-producers) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc methylaspartate cycle InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc TCA cycle II (plants and fungi) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfv01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc reductive TCA cycle II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfv00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc anaerobic energy metabolism (invertebrates, mitochondrial) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 144 412 6.6E-81
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 322 338 1.4E-28
PRINTS PR00145 Argininosuccinate lyase family signature - - 179 199 6.6E-5
Gene3D G3DSA:1.10.40.30 - - - 413 470 1.2E-16
PRINTS PR00145 Argininosuccinate lyase family signature - - 322 338 6.6E-5
FunFam G3DSA:1.10.40.30:FF:000002 Fumarate hydratase class II - - 413 469 1.6E-16
CDD cd01357 Aspartase - - 8 459 0.0
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 7 465 0.0
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 184 202 1.4E-28
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 276 303 1.4E-28
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 139 157 1.4E-28
PANTHER PTHR42696 ASPARTATE AMMONIA-LYASE - - 6 469 0.0
FunFam G3DSA:1.20.200.10:FF:000001 Fumarate hydratase, mitochondrial - - 144 411 4.2E-113
FunFam G3DSA:1.10.275.10:FF:000001 Fumarate hydratase, mitochondrial - - 8 143 2.1E-52
Gene3D G3DSA:1.10.275.10 - IPR024083 Fumarase/histidase, N-terminal 5 143 2.3E-53
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 15 347 3.8E-99
Pfam PF10415 Fumarase C C-terminus IPR018951 Fumarase C, C-terminal 413 465 1.1E-19
PRINTS PR00145 Argininosuccinate lyase family signature - - 138 160 6.6E-5
NCBIfam TIGR00839 JCVI: aspartate ammonia-lyase IPR004708 Aspartate ammonia-lyase 8 469 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.