Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a686
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pba02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 242 | 409 | 1.3E-42 |
| Pfam | PF17152 | Periplasmic sensor domain | IPR033417 | Periplasmic sensor domain CHASE8 | 43 | 143 | 1.7E-28 |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 186 | 406 | 5.4E-71 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 181 | 234 | 5.5E-5 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 252 | 407 | 2.67E-46 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 240 | 414 | 4.3E-56 |
| Coils | Coil | Coil | - | - | 215 | 235 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 243 | 405 | 1.5E-43 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 236 | 409 | 1.1E-58 |
| CDD | cd06225 | HAMP | - | - | 184 | 229 | 0.00136616 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 247 | 401 | 7.4E-47 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 249 | 404 | 2.35222E-61 |
| Gene3D | G3DSA:6.10.340.10 | - | - | - | 149 | 238 | 1.6E-5 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.