Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1271

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 149 167 5.7E-24
PANTHER PTHR43172 ADENYLOSUCCINATE LYASE - - 7 448 9.2E-118
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 279 295 5.7E-24
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 3 364 1.1E-118
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 104 122 5.7E-24
Gene3D G3DSA:1.10.40.30 - - - 366 451 4.4E-28
PRINTS PR00145 Argininosuccinate lyase family signature - - 234 258 2.9E-10
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 234 261 5.7E-24
PRINTS PR00145 Argininosuccinate lyase family signature - - 279 295 2.9E-10
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 16 304 4.6E-68
PRINTS PR00145 Argininosuccinate lyase family signature - - 144 164 2.9E-10
NCBIfam TIGR02426 JCVI: 3-carboxy-cis,cis-muconate cycloisomerase IPR012789 3-carboxy-cis,cis-muconate cycloisomerase-like 9 352 0.0
FunFam G3DSA:1.20.200.10:FF:000014 3-carboxy-cis,cis-muconate cycloisomerase - - 2 364 0.0
PRINTS PR00145 Argininosuccinate lyase family signature - - 103 125 2.9E-10
SMART SM00998 ADSL_C_2 IPR019468 Adenylosuccinate lyase C-terminal 367 446 4.1E-27
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 9 448 1.73E-122
Pfam PF10397 Adenylosuccinate lyase C-terminus IPR019468 Adenylosuccinate lyase C-terminal 368 445 3.9E-18
CDD cd01597 pCLME - - 9 448 0.0
FunFam G3DSA:1.10.40.30:FF:000007 Adenylosuccinate lyase - - 367 448 3.1E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.