Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1337

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009435 NAD biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008734 L-aspartate oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00760 Nicotinate and nicotinamide metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.50.50.60 - IPR036188 FAD/NAD(P)-binding domain superfamily 2 385 0.0
Pfam PF02910 Fumarate reductase flavoprotein C-term IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal 423 503 4.7E-14
Pfam PF00890 FAD binding domain IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain 9 374 1.4E-94
FunFam G3DSA:3.90.700.10:FF:000002 L-aspartate oxidase - - 230 343 6.0E-53
Gene3D G3DSA:1.20.58.100 - - - 407 519 8.2E-48
SUPERFAMILY SSF46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily 407 509 8.63E-32
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 179 197 2.4E-5
SUPERFAMILY SSF56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily 220 335 3.44E-42
NCBIfam TIGR00551 JCVI: L-aspartate oxidase IPR005288 L-aspartate oxidase 2 502 0.0
PANTHER PTHR42716 L-ASPARTATE OXIDASE IPR005288 L-aspartate oxidase 2 513 0.0
Coils Coil Coil - - 435 455 -
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain IPR036188 FAD/NAD(P)-binding domain superfamily 9 430 4.99E-62
FunFam G3DSA:1.20.58.100:FF:000002 L-aspartate oxidase - - 408 517 1.3E-48
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 337 359 2.4E-5
Gene3D G3DSA:3.90.700.10 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily 230 343 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.