Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3369

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00410 beta-Alanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00770 Pantothenate and CoA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01037 JCVI: dihydroorotate dehydrogenase family protein IPR005720 Dihydroorotate dehydrogenase domain 5 320 2.6E-48
Pfam PF14697 4Fe-4S dicluster domain - - 338 400 5.2E-22
Pfam PF01180 Dihydroorotate dehydrogenase IPR005720 Dihydroorotate dehydrogenase domain 7 305 7.2E-28
SUPERFAMILY SSF51395 FMN-linked oxidoreductases - - 1 320 9.33E-75
FunFam G3DSA:3.20.20.70:FF:000027 Dihydropyrimidine dehydrogenase [NADP(+)] - - 4 311 2.9E-119
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 4 307 2.3E-96
PANTHER PTHR43073 DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] - - 311 405 0.0
CDD cd02940 DHPD_FMN - - 3 301 0.0
Gene3D G3DSA:3.30.70.20 - - - 308 410 1.7E-25
SUPERFAMILY SSF54862 4Fe-4S ferredoxins - - 320 400 5.08E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.