Pseudomonas sp. UW4, PputUW4_00095 (trpB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004834 tryptophan synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR48077
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006568 tryptophan metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00263
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000162 tryptophan biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR48077
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuu01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06446 Trp-synth_B IPR006654 Tryptophan synthase, beta chain 34 394 0.0
Gene3D G3DSA:3.40.50.1100 - IPR036052 Tryptophan synthase beta chain-like, PALP domain superfamily 16 213 0.0
PIRSF PIRSF001413 Trp_syn_beta IPR023026 Tryptophan synthase beta chain/beta chain-like 2 404 0.0
SUPERFAMILY SSF53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes IPR036052 Tryptophan synthase beta chain-like, PALP domain superfamily 10 396 0.0
Gene3D G3DSA:3.40.50.1100 - IPR036052 Tryptophan synthase beta chain-like, PALP domain superfamily 61 392 0.0
Pfam PF00291 Pyridoxal-phosphate dependent enzyme IPR001926 Tryptophan synthase beta chain-like, PALP domain 60 385 3.7E-46
FunFam G3DSA:3.40.50.1100:FF:000004 Tryptophan synthase beta chain - - 213 391 7.6E-85
FunFam G3DSA:3.40.50.1100:FF:000001 Tryptophan synthase beta chain - - 79 212 2.1E-63
PANTHER PTHR48077 TRYPTOPHAN SYNTHASE-RELATED IPR023026 Tryptophan synthase beta chain/beta chain-like 15 400 0.0
Hamap MF_00133 Tryptophan synthase beta chain [trpB]. IPR023026 Tryptophan synthase beta chain/beta chain-like 9 398 52.434063
NCBIfam TIGR00263 JCVI: tryptophan synthase subunit beta IPR006654 Tryptophan synthase, beta chain 14 397 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.