Pseudomonas sp. UW4, PputUW4_04107 (cysM)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004124	cysteine synthase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01138	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006535	cysteine biosynthetic process from serine	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01138	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppuu01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu01200	Carbon metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu01230	Biosynthesis of amino acids	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu00920	Sulfur metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
MetaCyc		seleno-amino acid biosynthesis (plants)	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	ppuu01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu00270	Cysteine and methionine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.40.50.1100	-	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	39	157	4.5E-111
Pfam	PF00291	Pyridoxal-phosphate dependent enzyme	IPR001926	Tryptophan synthase beta chain-like, PALP domain	9	285	1.1E-66
Gene3D	G3DSA:3.40.50.1100	-	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	8	293	4.5E-111
SUPERFAMILY	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	5	293	1.57E-90
NCBIfam	TIGR01138	JCVI: cysteine synthase B	IPR005858	Cysteine synthase CysM	7	296	0.0
FunFam	G3DSA:3.40.50.1100:FF:000029	Cysteine synthase	-	-	152	293	6.9E-73
NCBIfam	TIGR01136	JCVI: cysteine synthase	IPR005856	Cysteine synthase	9	296	1.8E-123
FunFam	G3DSA:3.40.50.1100:FF:000003	Cystathionine beta-synthase	-	-	42	151	8.2E-43
CDD	cd01561	CBS_like	-	-	13	292	0.0
PANTHER	PTHR10314	CYSTATHIONINE BETA-SYNTHASE	-	-	9	297	5.3E-92

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.