Pseudomonas protegens Pf-5, PFL_0087
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 567 | 723 | 2.0E-45 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 557 | 726 | 1.9E-57 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 565 | 725 | 4.8E-50 |
| Coils | Coil | Coil | - | - | 532 | 566 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 301 | 323 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 556 | 727 | 6.1E-58 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 451 | 726 | 7.0E-74 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 466 | 493 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 572 | 725 | 1.65E-49 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 568 | 724 | 5.87705E-65 |
| Coils | Coil | Coil | - | - | 5 | 25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 195 | 260 | - |
| Coils | Coil | Coil | - | - | 451 | 471 | - |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 561 | 726 | 1.4E-52 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.