Pseudomonas protegens Pf-5, PFL_0744

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00304 HAMP_11 IPR003660 HAMP domain 181 234 1.3E-4
CDD cd06225 HAMP - - 184 229 0.00983836
Pfam PF17152 Periplasmic sensor domain IPR033417 Periplasmic sensor domain CHASE8 43 143 1.5E-28
SMART SM00267 duf1_3 IPR000160 GGDEF domain 236 411 4.8E-63
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 187 403 2.3E-72
Gene3D G3DSA:6.10.340.10 - - - 149 238 1.2E-5
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 242 409 1.5E-42
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 240 409 5.3E-56
CDD cd01949 GGDEF IPR000160 GGDEF domain 249 404 4.30638E-62
MobiDBLite mobidb-lite consensus disorder prediction - - 401 422 -
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 243 404 5.8E-44
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 252 406 1.33E-46
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 247 403 5.2E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.